Research conclusions: (1) The incoordination between the rail transit and urban spatial layout is affected by the following factors: unlike formulation department and term, different examination and approval department, diversity of investment main body, construction and management department, etc. Relevant departments should strengthen communication. Urban rail transit development should be coordinated with the urban spatial layout. (2)Accurate passenger flow forecast is important and difficult, thus the impact of rail transit on industry, business, science park and industrial zone along the rail transit line, even its influence on travel psychology and habit have to be considered. (3)From the research and analysis, this paper provides valuable advice on synchronous coordination of planning and construction between rail transit and urban spatial layout, which is conducive to strengthen control and management for the planning, investment, construction and management departments.